Datasets

These datasets are ready to be explored with Gitools 2.2 and above. You may download the any heatmap file from here or open them directly from within the latest version of Gitools.

You may download all the resources from this website or within Gitools. Launching Gitools requires Oracle Java 7 to be installed in your computer and having security settings set right as described on the Download page.

Important
- Please make sure you are familiar with the TCGA publication guidelines when using any TCGA data for your research.
- The heatmap files available for download here are prepared to work with Gitools 2.2 (and newer).

PCAWG

Datasets from PCAWG whole-genome panorama of cancer drivers

Heatmaps: 2

IntOGen

Datasets from IntOGen-mutations, which summarize somatic mutations, genes and pathways involved in tumorigenesis (see manuscript). It contains the results of analyzing 4623 tumor exomes from 13 cancer sites to identify cancer drivers.

Heatmaps: 5

TCGA Pancancer12

Integrative analysis of 12 individual TCGA projects. (publications) All heatmaps contain annotations for samples and genes amongst which are the driver information from various methods and subtype/cluster information from the COCA analysis.

Heatmaps: 3

TCGA - individual projects

Data for individual projects used in the pancancer12 study.

Heatmaps: 10